Table 2

Pectinolytic glycoside hydrolases, polysaccharide lyases and carbohydrate esterases of the 12 fungal species used in this study
CAZy family S. sclerotiorum B. fuckeliana A. nidulans A. clavatus A. oryzae A. niger M. orysae P. anserina T. virens G. zeae P. chrysosporium R. oryzae
GH2 LAC 1 1 3 0 1 0 3 3 1 3 0 0
GH28 (Total) 16 18 10 2 20 21 3 0 6 6 3 18
- PGA 6 9 3 1 5 7 1 0 2 2 1 15
- PGX 2 2 3 1 2 5 1 0 2 3 1 3
- RHG 4 4 1 0 6 6 1 0 0 1 1 0
- RGX 3 2 2 0 5 2 0 0 2 0 0 0
- XGH 1 1 1 0 2 1 0 0 0 0 0 0
GH35 LAC 4 4 4 3 7 5 0 1 1 3 3 1
GH43 (Total)* 4 5 15 13 20 11 20 10 3 17 4 2
- ABF 0 0 3 0 3 0 6 2 0 0 0 0
- ABN 1 1 4 5 5 4 1 0 0 1 1 2
GH78 RHA 4 8 9 0 8 8 3 1 3 7 0 0
GH88 0 1 3 0 3 1 1 0 3 1 1 0
GH93 ABX 1 1 2 1 3 1 1 3 1 2 0 0
GH105 URGH 1 1 4 3 2 2 3 0 1 3 0 0
GH51 ABF 2 3 3 3 3 4 3 1 0 2 2 0
GH53 GAL 2 2 1 0 1 1 1 1 0 1 1 0
GH54 ABF 1 1 1 1 1 1 1 0 2 1 0 0
GH127 ABF 0 1 1 1 0 0 0 0 0 1 0 0
PL1 PEL, PLY 4 6 9 2 12 7 2 4 0 9 0 0
PL3 PLY 0 2 5 1 3 0 1 2 0 7 0 0
PL4 RGL 0 0 4 2 4 2 1 1 0 3 0 0
PL9 PLY 0 0 1 0 1 0 0 0 0 1 0 0
CE8 PME 5 5 3 7 5 3 1 1 2 6 0 6
CE12 RGAE 3 3 2 1 4 2 3 1 0 3 0 0

* Total refers to all the GH43 including the activities not directly involved in pectin degradation such as β-xylosidase or exo-b-1,3-galactanase. Additional file 2.

Benoit et al.

Benoit et al. BMC Genomics 2012 13:321   doi:10.1186/1471-2164-13-321

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