Table 1

Transcriptome statistics
Contig length Number Percentage (%) Uni-scaffold length Number Percentage (%)
100 ~ 200 bp 205,735 60.02 100 ~ 200 bp 4,613 10.84
201 ~ 300 bp 70,767 20.65 201 ~ 300 bp 5,727 13.45
301 ~ 400 bp 26,685 7.79 301 ~ 400 bp 3,786 8.89
401 ~ 500 bp 14,143 4.13 401 ~ 500 bp 2,709 6.36
501 ~ 600 bp 8,174 2.38 501 ~ 600 bp 2,053 4.82
601 ~ 700 bp 5,052 1.47 601 ~ 700 bp 1,756 4.13
701 ~ 800 bp 3,336 0.97 701 ~ 800 bp 1,534 3.60
801 ~ 900 bp 2,332 0.68 801 ~ 900 bp 1,415 3.32
901 ~ 1000 bp 1,514 0.44 901 ~ 1000 bp 1,343 3.16
1001 ~ 2000 bp 4,567 1.33 1001 ~ 2000 bp 10,256 24.09
2001 ~ 3000 bp 422 0.12 2001 ~ 3000 bp 4,616 10.84
3001 ~ 10 kbp 49 0.01 3001 ~ 10 kbp 2,734 6.42
>10 kbp 0 0.00 >10 kbp 24 0.06
Total Contigs 342,776 100.00 Total Uni-scaffolds 42,566 100.00
Total Length (bp) 82,262,551 Total Length (bp) 47,986,977
N50 Length (bp) 263 N50 Length (bp) 1,901
Mean Length (bp) 239 Mean Length (bp) 1,127

Zhang et al.

Zhang et al. BMC Genomics 2012 13:316   doi:10.1186/1471-2164-13-316

Open Data