Table 2

Survey of VdLs.17 ESTs corresponding to the transposons identified in this study
Transposon Number of ESTsa
CM CM + RE CM - N
    Class I
VdlTRE1 43 21 23
VdlTRE2 31 26 33
VdlTRE3 24** 16 21***
VdlTRE4 25** 23* 28
VdlTRE5 3 2 5
VdLINE1 13 11 4
    Class II
DAHLIAE1a 4 - 6
DAHLIAE1b - 4 4
DAHLIAE1d 3 - 11
DAHLIAE1e 6 - 3
DAHLIAE2 6 2 5
DAHLIAE3 - 4 -
VdHAT1 12 2 8
VdHAT2 - 1 -
VdHAT3 - 1 -
VdMULE2 4 2 -
VdMULE3 - 5 -
VdMULE8 - 2 -

aVdLs.17 expressed sequence tag (EST) collections were generated from cultures grown in CM (complete medium), CM + RE (CM amended with root extract), or CM-N (CM lacking nitrogen source). For VdLTRE2, VdLTRE3 and VdLTRE4, the corresponding ESTs aligned with all three elements except that * one EST aligned with only VdLTRE4, ** four ESTs aligned with both VdLTRE 3 and 4, and *** one EST aligned with only VdLTRE3.

Amyotte et al.

Amyotte et al. BMC Genomics 2012 13:314   doi:10.1186/1471-2164-13-314

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