Table 3

Phylogenetically polarized lineage-specific substitutions for a)Gossypium barbadense, and b)Gossypium hirsutumallotetraploid genomes relative to their A- and D-genome diploid counterparts
Lineage Number of Contigs Total Nucleotides Lineage-Specific Substitutions
a) Gossypium barbadense lineage-specific SNPs relative to A- and D-genome diploids
A2 4,863 3,755,712 3,211
AT 4,863 3,755,712 5,556
D5 5,750 3,735,542 4,754
DT 5,750 3,735,542 8,653
b) Gossypium hirsutum lineage-specific SNPs relative to A- and D-genome diploids
Lineage Number of Contigs Total Nucleotides Lineage-Specific Substitutions
A2 5,051 3,839,389 3,977
AT 5,051 3,839,389 6,412
D5 6,041 4,079,248 6,138
DT 6,041 4,079,248 10,393

Flagel et al.

Flagel et al. BMC Genomics 2012 13:302   doi:10.1186/1471-2164-13-302

Open Data