Table 1

SNP mining results.

Filtering criteria

RAD-contigs count

SNPs count


Total SNPs mining (CcRAD1)

12,068

33,784

"Fully informative" RAD loci (CcRAD2)

7,478

17,450

Putative testcross markers (CcRAD2)

6,289

8,530

"Romanesco C3" testcross over "Altilis 41"

724

883

"Altilis 41" testcross over "Romanesco C3"

1,541

2,210

"Romanesco C3" testcross over "Creta 4"

778

937

"Creta 4" testcross over "Romanesco C3"

3,246

4,500

Common intercross markers (CcRAD2)

117

136


Two separated filtering criteria outcomes are reported (CcRAD1 and CcRAD2). Testcross and intercross markers evaluation was carried out exclusively on CcRAD2, representing SNP sites having sequence information for each of the three samples analyzed.

Scaglione et al. BMC Genomics 2012 13:3   doi:10.1186/1471-2164-13-3

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