Additional file 1 Table S1.

Lactococcus lactis TFBS WebLogos. Column 1 presents all known (studied) regulons of L. lactis. Alternative names for TFBS are given in column 2. The consensus sequence given in columns 3 were taken from the literature references from Table 1. In column 4, the TFBS identities are given that are used by PePPER. The upstream sequences of the genes of the regulons indicated in column 1 were aligned using MEME [9]. The obtained DNA motifs (WebLogos) are presented in column 5.

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de Jong et al. BMC Genomics 2012 13:299   doi:10.1186/1471-2164-13-299