qPCRflowChart.png. A workflow for a typical RT-qPCR experiment making use of the two packages, showing the different steps used in the analysis, what packages are used for each step and the relevant inputs and outputs into the packages, and the names of the functions to be called. More comprehensive information, and more details about the different analyses available can be found in the package vignettes.
Perkins et al. BMC Genomics 2012 13:296 doi:10.1186/1471-2164-13-296