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Open Access Highly Accessed Research article

Transcriptional profile of Taxus chinensis cells in response to methyl jasmonate

Shu-tao Li12, Peng Zhang12, Meng Zhang12, Chun-hua Fu12, Chun-fang Zhao12, Yan-shan Dong12, An-yuan Guo3 and Long-jiang Yu12*

Author Affiliations

1 Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China

2 Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan, China

3 Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China

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BMC Genomics 2012, 13:295  doi:10.1186/1471-2164-13-295

Published: 2 July 2012

Additional files

Additional file 1:

Contigs length distribution of T0 and T16.

Format: TIFF Size: 4.6MB Download file

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Additional file 2:

Scaffolds length distribution of T0 and T16.

Format: TIFF Size: 4.6MB Download file

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Additional file 3:

The annotation of all unigenes.

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Additional file 4:

Unigenes with pathway annotation.

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Additional file 5:

Overview of up-regulated genes.

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Additional file 6:

Overview of down-regulated genes.

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Additional file 7:

GO annotation of DGEs.

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Additional file 8:

GO categories for up- and down-regulated genes.

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Additional file 9:

The KEGG analyses separated by cell line.

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Additional file 10:

DEGs with pathway annotation.

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Additional file 11:

Relative expression of randomly selected genes as determined by qRT-PCR.

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Additional file 12:

All transcript sequences identified to encode putative factors.

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Additional file 13:

The up-regulated transcript sequences encoding putative transcription factors.

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Additional file 14:

The down-regulated transcript sequences encoding putative transcription factors.

Format: XLS Size: 63KB Download file

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Additional file 15:

Primers used in qRT-PCR for validation of differentially expressed genes.

Format: XLS Size: 21KB Download file

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