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Open Access Research article

A genome-wide detection of copy number variations using SNP genotyping arrays in swine

Jiying Wang12, Jicai Jiang1, Weixuan Fu1, Li Jiang1, Xiangdong Ding1, Jian-Feng Liu1* and Qin Zhang1*

Author Affiliations

1 Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China

2 Shandong Provincial Key Laboratory of Animal Disease Control and Breeding, Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan, 250100, China

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BMC Genomics 2012, 13:273  doi:10.1186/1471-2164-13-273

Published: 22 June 2012

Additional files

Additional file 1 :

Table S1. Information of 382 identified CNVRs and their distributions in the four populations. Additional file 1: Table S2. Information of genes in the identified CNVRs and their comparison with Human Database of Genomic Variants. Additional file 1: Table S3. Gene ontology (GO) analyses of genes in the identified CNVRs. Additional file 1: Table S4. Pathway analyses of genes in the identified CNVRs. Additional file 1: Table S5. Previously reported QTLs overlapped with identified CNVRs. Additional file 1: Table S6. Information and the primers used in qPCR analyses of the 18 CNVRs chosen to be validated. Additional file 1: Table S7. Comparison between identified CNVRs and those of previous reports of pig CNVs. Additional file 1: Table S8. Pig Ensembl gene IDs and their orthologous mouse IDs. Additional file 1: Table S9. Functions of the genes validated to be copy number variable by qPCR assay [52-65].

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