Table 2

Phakopsora pachyrhiziEST clones displaying similarity (BLASTX, E value <5e-05) to proteins in the NCBI non-redundant protein database, grouped into functional categories using the Munich Information Center of Protein Sequences (MIPS) Functional Catalogue
Clone/contig Accession No. Description Species E value
01. Metabolism
Pp3070 EGG05957 family 1 Carbohydrate esterase Melampsora larici-populina 5.00E-9
Pp3292 EFP76188 FLU1-II (Glutamine synthetase) Puccinia graminis f. sp. tritici 8.00e-56
Pp3391 XP_001833926 Palmitoyltransferase AKR1 Coprinopsis cinerea okayama 9.00E-141
Pp3684 XP_571450 Hydroxymethylglutaryl- CoA Cryptococcus neoformans var. 3.00E-65
reductase (NADPH) neoformans
Pp3741 EGG05960 family 4 carbohydrate esterase M. larici-populina 8.00E-14
Pp3942 EFP86206 mannosyl phosphorylinositol P. graminis f. sp. tritici 1.00E-128
ceramide synthase SUR1
10. Cell cycle and DNA processing
Pp3291 XP_001834782 DNA replication complex C. cinerea okayama 1.00E-08
GINS protein
Pp3495 EGD98306 G2/M phase checkpoint control Trichophyton tonsurans 6.00E-26
protein SUM2
Pp3590 EFP88202 DNA repair protein RAD51 P. graminis f. sp. tritici 3.00E-161
Pp3976 XP_003195178 Chromatin remodeling-related Cryptococcus gattii 3.00E-45
14. Protein Fate (folding, modification, destination)
Pp3243 XP_001838238 Prefoldin subunit 5 C. cinerea okayama 3.00E-26
Pp3282 XP_567169 Ubiquitin-protein ligase C. neoformans var. neoformans 2.00E-26
20. Cellular transport, transport facilitation and transport routes
Pp3060 XP_001883758 Cytoplasmic dynein intermediate Laccaria bicolor 2.00E-128
Pp3772 XP_571408 Membrane transporter C. neoformans var. neoformans 3.00E-20
30. Cellular communication/signal transduction mechanism
Pp3004 XP_571731 Serine/threonine-protein C. neoformans var. neoformans 0.00
kinase orb6
Pp3435 EFP87863 Inositol hexakisphosphate kinase 2 P. graminis f. sp. tritici 8.00E-96
32. Cell Rescue, Defense and Virulence
contig2C XP_003192457 Heat shock transcription factor 2 C. gattii 1.00E-19
38. Transposable elements
Pp3508 ABI34274 IS10 transposase, putative Solanum lycopersicum 0.00
99. Unclassified
Pp3161 EGG09840 hypothetical protein M. larici-populina 6.00E-96
Pp3267 EFP87812 hypothetical protein P. graminis f. sp. tritici 1.00E-6
Pp3464 EFP91488 hypothetical protein P. graminis f. sp. tritici 1.00E-19
Pp3502 XP_569331 hypothetical protein M. larici-populina 4.00E-115
Pp3505 XP_002396863 hypothetical protein M. larici-populina 7.00E-37
Pp3853 EGG01299 hypothetical protein M. larici-populina 5.00E-25
Pp3884 EFP87187 hypothetical protein P. graminis f. sp. tritici 1.00E-24
contig2bb EFP88656 hypothetical protein P. graminis f. sp. tritici 3.00E-73

Stone et al.

Stone et al. BMC Genomics 2012 13:269   doi:10.1186/1471-2164-13-269

Open Data