Table 2

Expression data of miRNAs differentially expressed during the three filling stages
Pattern of regulation miRNA name MiRNA expression signals (average)b Fold changeb Fold changeb p-valuea,c
G1 G2 G3 (G2/G1) (G3/G2)
Up miR1850 56 53 293 0.95 5.53 7.40E-03
miR1874-5p 349 1140 1266 3.27 1.11 2.29E-05
miR1862e 133 378 384 2.84 1.02 3.69E-03
miR1862d 247 526 656 2.13 1.25 3.17E-03
miR1874-3p 2473 4684 5507 1.89 1.18 3.57E-03
miR1435 86 138 357 1.60 2.59 2.24E-03
miR1881 36 65 88 1.81 1.35 1.78E-03
*miR1867 109 219 186 2.01 0.85 3.14E-03
miR1884b 99 213 168 2.15 0.79 3.41E-03
Down miR171a 118 58 42 0.49 0.72 1.13E-03
miR171b-f 451 253 182 0.56 0.72 4.64E-03
miR530-5p 4522 3286 1514 0.73 0.46 4.18E-04
miR160f 125 38 31 0.30 0.82 1.27E-03
miR160a-d 251 69 38 0.27 0.55 8.01E-04
miR160e 275 68 48 0.25 0.71 1.16E-03
miR444b.2 770 443 63 0.58 0.14 3.68E-04
*miR1873 123 65 47 0.52 0.72 5.21E-05
miR2055 138 140 97 1.01 0.69 5.23E-03

*: The probe sequence is on the same precursor of this miRNA, but had a ±2 nt range from the annotated miRNA sequence.

a: p-value < 0.01.

b: Mean levels averaged from three biological replicates; fold changes in miRNA levels were compared from the milky (G1) to hard dough (G3) stages and selected as less than 0.5 or more than 2.0 (from G1 to G3).

c: Signal values <100 (lower than three times the background signal) were not considered for variance analysis.

Lan et al.

Lan et al. BMC Genomics 2012 13:264   doi:10.1186/1471-2164-13-264

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