Table 1

List of 91 CCCH genes identified in Populus and their sequence characteristics (bp, base pair; aa, amino acids; D, Dalton)
Gene symbol Gene locus Arabidopsis orthologs locus ORF(bp) Exons Protein Number of CCCH motif
Length(aa) Mol. Wt (kD) PI
PtC3H1 POPTR_0007s01080.1 AT1G03790.1 1152 1 383 43.28 7.25 2
PtC3H2 POPTR_0017s04510.1 AT1G03790.1 1149 1 382 43.02 8.04 2
PtC3H3 POPTR_0002s21790.1 AT1G04990.1 1353 7 450 48.77 8.06 5
PtC3H4 POPTR_0014s15770.1 AT1G04990.1 1341 7 446 48.23 8.06 5
PtC3H5 POPTR_0009s04610.1 AT1G07360.1 1596 4 531 59.51 7.38 1
PtC3H6 POPTR_0009s04630.1 AT1G07360.1 1596 4 531 59.30 7.54 1
PtC3H7 POPTR_0004s23730.1 AT1G10320.1 780 4 259 31.16 4.73 1
PtC3H8 POPTR_0002s02670.1 AT1G19860.1 1278 4 425 46.16 6.38 1
PtC3H9 POPTR_0005s11800.1 AT1G19860.1 1722 5 573 63.08 8.47 1
PtC3H10 POPTR_0005s25760.1 AT1G19860.1 1263 5 420 45.18 7.05 1
PtC3H11 POPTR_0002s07810.1 AT1G21580.1 6363 10 2120 23.27 8.85 5
PtC3H12 POPTR_0005s20550.1 AT1G21580.1 6228 11 2075 22.86 8.33 5
PtC3H13 POPTR_0001s36810.1 AT1G30460.1 2010 9 669 73.34 6.90 3
PtC3H14 POPTR_0011s09220.1 AT1G30460.2 837 2 278 30.73 8.19 3
PtC3H15 POPTR_0001s02330.1 AT1G32360.1 1134 2 377 40.01 6.97 3
PtC3H16 POPTR_0003s09240.1 AT1G32360.1 1173 2 390 42.10 6.77 3
PtC3H17 POPTR_0004s09410.1 AT1G66810.1 942 1 313 34.79 8.04 2
PtC3H18 POPTR_0005s15100.1 AT1G66810.1 1017 2 338 37.23 8.22 2
PtC3H19 POPTR_0005s19930.1 AT1G66810.1 888 3 295 32.01 9.19 1
PtC3H20 POPTR_0010s12860.1 AT1G68200.2 801 3 266 30.20 8.28 2
PtC3H21 POPTR_0006s08100.1 AT1G75340.1 1299 11 432 46.50 8.66 1
PtC3H22 POPTR_0008s14320.1 AT2G02160.1 2229 3 742 81.56 5.41 3
PtC3H23 POPTR_0010s10850.1 AT2G02160.1 2208 3 735 81.12 5.59 3
PtC3H24 POPTR_0014s16340.1 AT2G05160.1 1731 8 576 65.58 6.87 1
PtC3H25 POPTR_0006s25080.1 AT2G19810.1 1173 1 390 42.62 7.86 2
PtC3H26 POPTR_0006s13510.1 AT2G20280.1 1116 8 371 42.43 5.49 2
PtC3H27 POPTR_0008s04540.1 AT2G20280.1 1092 8 363 41.12 5.06 2
PtC3H28 POPTR_0016s08500.1 AT2G20280.1 1083 8 360 41.15 5.06 2
PtC3H29 POPTR_0308s00200.1 AT2G20280.1 1077 8 358 40.76 5.48 2
PtC3H30 POPTR_0018s02840.1 AT2G24830.1 1536 4 511 56.91 4.83 1
PtC3H31 POPTR_0011s05550.1 AT2G33835.1 2010 5 669 73.52 7.52 1
PtC3H32 POPTR_0008s06940.1 AT2G40140.1 2040 1 679 73.87 7.68 2
PtC3H33 POPTR_0010s19520.1 AT2G40140.1 1839 4 612 66.62 6.77 2
PtC3H34 POPTR_0012s12760.1 AT2G40140.1 2025 1 655 71.58 7.01 2
PtC3H35 POPTR_0001s27370.1 AT2G41900.1 2133 1 710 77.59 6.94 2
PtC3H36 POPTR_0006s05240.1 AT2G41900.1 2208 1 735 79.81 6.40 2
PtC3H37 POPTR_0006s05250.1 AT2G41900.1 2106 1 701 76.47 6.36 2
PtC3H38 POPTR_0009s06580.1 AT2G41900.1 2187 1 728 79.28 6.50 2
PtC3H39 POPTR_0016s05410.1 AT2G41900.1 2199 1 732 79.67 6.50 2
PtC3H40 POPTR_0017s06030.1 AT2G47680.1 3171 13 1056 119.38 6.77 2
PtC3H41 POPTR_0013s08490.1 AT3G02830.1 1560 11 519 57.42 8.42 4
PtC3H42 POPTR_0013s08500.1 AT3G02830.1 318 2 105 11.16 7.34 1
PtC3H43 POPTR_0019s08030.1 AT3G02830.1 1338 7 445 48.48 8.51 5
PtC3H44 POPTR_0008s22730.1 AT3G06410.1 1434 7 477 50.53 8.62 5
PtC3H45 POPTR_0003s06730.1 AT3G08505.1 1548 10 515 59.51 9.26 2
PtC3H46 POPTR_0004s14200.1 AT3G08505.1 1395 6 464 52.58 7.66 4
PtC3H47 POPTR_0009s06730.1 AT3G08505.1 1155 8 384 42.48 8.10 4
PtC3H48 POPTR_0016s04690.1 AT3G12130.1 858 3 285 30.04 9.91 3
PtC3H49 POPTR_0008s07980.1 AT3G12680.1 1425 11 474 51.29 8.27 5
PtC3H50 POPTR_0010s18390.1 AT3G12680.1 1599 12 532 57.88 8.08 6
PtC3H51 POPTR_0005s06240.1 AT3G18640.1 2577 3 858 95.28 7.73 3
PtC3H52 POPTR_0007s03970.1 AT3G18640.1 2583 3 860 95.64 8.69 3
PtC3H53 POPTR_0003s06010.1 AT3G19360.1 795 2 264 28.80 9.99 3
PtC3H54 POPTR_0004s17670.1 AT3G19360.1 1155 2 384 42.89 8.48 3
PtC3H55 POPTR_0009s13310.1 AT3G19360.1 1026 2 341 38.08 7.94 3
PtC3H56 POPTR_0007s02620.1 AT3G21810.1 1314 11 437 49.05 9.09 1
PtC3H57 POPTR_0001s34600.1 AT3G27700.1 2946 5 981 107.01 6.94 1
PtC3H58 POPTR_0017s10830.1 AT3G27700.1 2961 5 986 107.25 7.20 1
PtC3H59 POPTR_0009s04950.1 AT3G47120.1 1053 4 350 41.27 8.97 1
PtC3H60 POPTR_0012s09400.1 AT3G48440.1 1434 6 477 53.20 5.48 5
PtC3H61 POPTR_0015s10050.1 AT3G48440.1 1494 7 497 56.30 5.13 5
PtC3H62 POPTR_0005s11920.1 AT3G51120.1 4575 11 1524 167.73 5.98 1
PtC3H63 POPTR_0004s16880.1 AT3G51120.1 3339 9 1112 121.35 7.18 1
PtC3H64 POPTR_0007s13760.1 AT3G51120.1 4818 10 1605 176.29 5.97 1
PtC3H65 POPTR_0007s13990.1 AT3G51180.1 1674 4 557 61.21 9.16 1
PtC3H66 POPTR_0001s05760.1 AT3G51950.1 2124 8 707 77.04 6.17 1
PtC3H67 POPTR_0001s26250.1 AT3G51950.1 1911 8 636 69.96 6.43 1
PtC3H68 POPTR_0003s20310.1 AT3G51950.1 2118 8 705 77.16 6.15 1
PtC3H69 POPTR_0009s05520.1 AT3G51950.1 2205 8 734 81.19 5.93 1
PtC3H70 POPTR_0012s13800.1 AT4G25440.1 1359 9 452 48.96 7.68 2
PtC3H71 POPTR_0015s13760.1 AT4G25440.1 1365 9 454 49.48 7.49 2
PtC3H72 POPTR_0018s04720.1 AT4G29190.1 1155 1 384 42.18 7.33 2
PtC3H73 POPTR_0009s12840.1 AT4G38890.1 2115 10 704 77.83 6.58 1
PtC3H74 POPTR_0001s05070.1 AT5G06770.1 915 3 304 32.51 9.80 3
PtC3H75 POPTR_0003s21780.1 AT5G06770.1 948 3 315 33.72 9.77 3
PtC3H76 POPTR_0006s20620.1 AT5G06770.1 1008 4 335 35.18 9.89 3
PtC3H77 POPTR_0016s04590.1 AT5G06770.1 855 3 284 29.92 9.79 3
PtC3H78 POPTR_0001s26240.1 AT5G12440.1 2025 7 674 74.81 5.72 1
PtC3H79 POPTR_0001s28300.1 AT5G12440.1 663 1 220 24.13 7.47 1
PtC3H80 POPTR_0007s12500.1 AT5G12440.1 291 1 96 10.76 8.22 1
PtC3H81 POPTR_0001s26560.1 AT5G12850.1 2028 1 675 73.98 6.76 2
PtC3H82 POPTR_0009s05810.1 AT5G12850.1 1887 1 628 69.16 6.72 2
PtC3H83 POPTR_0010s02320.1 AT5G18550.1 1371 7 456 48.77 8.53 5
PtC3H84 POPTR_0002s00480.1 AT5G42820.1 822 1 273 32.47 8.99 2
PtC3H85 POPTR_0004s20030.1 AT5G42820.1 963 5 320 37.42 9.61 2
PtC3H86 POPTR_0005s27940.1 AT5G42820.1 819 1 272 32.24 9.47 2
PtC3H87 POPTR_0006s11790.1 AT5G42820.1 936 4 311 36.25 9.40 2
PtC3H88 POPTR_0006s15670.1 AT5G56900.2 1821 9 606 67.52 6.90 2
PtC3H89 POPTR_0006s15080.1 AT5G56930.1 2787 7 928 101.34 8.46 3
PtC3H90 POPTR_0001s25960.1 AT5G58620.1 2115 1 704 76.38 6.14 2
PtC3H91 POPTR_0009s05150.1 AT5G58620.1 2067 1 703 74.40 5.97 2

Molecular Wt and PI of Populus CCCH proteins have been calculated using DNAman software.

Chai et al.

Chai et al. BMC Genomics 2012 13:253   doi:10.1186/1471-2164-13-253

Open Data