Table 7

Population-wide association between two closely-linked SNPs in the IPN QTL region and mortality in a freshwater IPNV challenge (all associations significant at Pā€‰<ā€‰0.05)a
2007-strip yeargroup (Ten QTL mapping families)
Mortality Proportion (SE)
SNP RR RS SS
SSA0139ECIG 0.00 (0.04) 0.22 (0.02) 0.42 (0.02)
RAD_HT01 0.00 (0.03) 0.24 (0.02) 0.54 (0.03)
2007-strip yeargroup (200 breeding program families)
SNP RR RS SS
SSA0139ECIG 0.12 (0.02) 0.24 (0.01) 0.47 (0.01)
RAD_HT01 0.11 (0.01) 0.25 (0.01) 0.63 (0.01)
2006-strip yeargroup (200 breeding program families)
SNP RR RS SS
SSA0139ECIG 0.10 (0.02) 0.20 (0.01) 0.66 (0.01)
RAD_HT01 0.10 (0.03) 0.17 (0.01) 0.60 (0.01)
All data combined
SNP RR RS SS
SSA0139ECIG 0.11 (0.01) 0.24 (0.01) 0.57 (0.01)
RAD_HT01 0.08 (0.01) 0.22 (0.01) 0.61 (0.01)

a For SSA0139ECIG and RAD_HT01 the SNP alleles associated with resistance were thymine and the SNP alleles associated with susceptibility were guanine and adenine respectively.

Houston et al.

Houston et al. BMC Genomics 2012 13:244   doi:10.1186/1471-2164-13-244

Open Data