|Details of the bi-allelic RAD loci and filtered putative SNPs and PSVs in Family 1 and Family 2|
|Family 1||Family 2||Commona||Total|
|Total bi-allelic RAD loci||10,238||10,930||6,668||14,500|
|Bi-allelic RAD loci removed during filteringb||2,109||3,804||797||5,116|
|Remaining bi-allelic RAD loci||8,130||7,127||5,871||9,386|
|Bi-allelic RAD loci with both alleles fixed||3,768||3,491||2,674||4,585|
|Segregating bi-allelic RAD loci||4,362||3,636||3,197||4,801|
a Common refers to loci where at least one of the RAD alleles at a RAD marker in family 1 matches exactly to one of the RAD alleles at a RAD marker in family 2. In the case of putative SNPs, common refers to the same SNP segregating in both families at the same position in the RAD marker sequence.
b Filtering criteria given in the ‘Methods’.
Houston et al.
Houston et al. BMC Genomics 2012 13:244 doi:10.1186/1471-2164-13-244