Table 2

Details of the bi-allelic RAD loci and filtered putative SNPs and PSVs in Family 1 and Family 2
Family 1 Family 2 Commona Total
Total bi-allelic RAD loci 10,238 10,930 6,668 14,500
Bi-allelic RAD loci removed during filteringb 2,109 3,804 797 5,116
Remaining bi-allelic RAD loci 8,130 7,127 5,871 9,386
Bi-allelic RAD loci with both alleles fixed 3,768 3,491 2,674 4,585
Segregating bi-allelic RAD loci 4,362 3,636 3,197 4,801
Putative SNPs 4,725 3,927 1,940 6,712

a Common refers to loci where at least one of the RAD alleles at a RAD marker in family 1 matches exactly to one of the RAD alleles at a RAD marker in family 2. In the case of putative SNPs, common refers to the same SNP segregating in both families at the same position in the RAD marker sequence.

b Filtering criteria given in the ‘Methods’.

Houston et al.

Houston et al. BMC Genomics 2012 13:244   doi:10.1186/1471-2164-13-244

Open Data