Open Access Research article

An elm EST database for identifying leaf beetle egg-induced defense genes

Kerstin Büchel12, Eric McDowell3, Will Nelson4, Anne Descour4, Jonathan Gershenzon2, Monika Hilker1, Carol Soderlund4, David R Gang3, Trevor Fenning25 and Torsten Meiners1*

Author Affiliations

1 Freie Universität Berlin, Applied Zoology / Animal Ecology, Berlin, Germany

2 Max Planck Institute for Chemical Ecology, Dept. of Biochemistry, Jena, Germany

3 Washington State University, Institute of Biological Chemistry, Pullman, WA, USA

4 University of Arizona, BIO5 Institute and Plant Sciences, Tucson, AZ, USA

5 Forest Research, Northern Research Station, Midlothian, Scotland, UK

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BMC Genomics 2012, 13:242  doi:10.1186/1471-2164-13-242

Published: 15 June 2012

Additional files

Additional file 1 :

Figure A1. Size distribution of the unique transcripts (≥2 EST) (=contigs) derived from Ulmus minor assemblies.

Format: DOCX Size: 61KB Download file

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Additional file 2 :

Figure A2. Number of unique transcripts (≥2 EST) (= contigs) derived from Ulmus minor assemblies by EST count.

Format: DOCX Size: 53KB Download file

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Additional file 3 :

Figure A3. Number of ESTs derived from Ulmus minor assemblies sorted by open reading frame length (ORF; complete bases); contigs = unique transcripts (≥2 EST).

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Additional file 4 :

Table A1: Most abundant gene products in Ulmus minor leaf EST database.

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Additional file 5 :

Table A2. Distribution of annotated Ulmus minor unique transcripts according to the plant genus.

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Additional file 6 :

Excel file of the library comparisons E vs EF vs C of GO category “defense response”, sorted by R stat.

Format: XLS Size: 307KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 7 :

Excel file of the library comparisons F vs C vs EF +F of GO category “defense response”, sorted by R stat.

Format: XLS Size: 1.4MB Download file

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Additional file 8 :

Excel file of the library comparisons F vs EF vs MeJA of GO category “defense response”, sorted by R stat.

Format: XLS Size: 485KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 9 :

Ipath maps.

Format: PPTX Size: 7.5MB Download file

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Additional file 10 :

Excel file of the Ipath EC query.

Format: XLSX Size: 97KB Download file

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