Table 3

Pairwise breed comparison of correlation of phase and proportion of phase agreement at various distances

Breeds Compared

Distance1

Proportion of r with opposite sign2

Correlation of rij(k) and rij(k')3


0-10 kb

0.107

0.875

10-50 kb

0.184

0.762

Duroc - Hampshire

50-100 kb

0.246

0.668

0.9-1 Mb

0.391

0.408

4.9-5 Mb

0.469

0.210


0-10 kb

0.108

0.872

10-50 kb

0.186

0.773

Duroc - Landrace

50-100 kb

0.251

0.681

0.9-1 Mb

0.395

0.438

4.9-5 Mb

0.485

0.190


0-10 kb

0.104

0.870

10-50 kb

0.195

0.761

Duroc - Yorkshire

50-100 kb

0.252

0.670

0.9-1 Mb

0.396

0.422

4.9-5 Mb

0.468

0.201


0-10 kb

0.099

0.882

10-50 kb

0.184

0.776

Hampshire - Landrace

50-100 kb

0.242

0.697

0.9-1 Mb

0.392

0.441

4.9-5 Mb

0.475

0.189


0-10 kb

0.113

0.871

10-50 kb

0.189

0.771

Hampshire - Yorkshire

50-100 kb

0.249

0.686

0.9-1 Mb

0.389

0.439

4.9-5 Mb

0.459

0.245


0-10 kb

0.087

0.921

10-50 kb

0.160

0.842

Landrace - Yorkshire

50-100 kb

0.204

0.783

0.9-1 Mb

0.353

0.571

4.9-5 Mb

0.448

0.297


1Interval length in kb

2Proportion of SNP pairs having r with reversed sign within the interval

3Correlation of phase between two breeds (k and k') within the given interval

Badke et al. BMC Genomics 2012 13:24   doi:10.1186/1471-2164-13-24

Open Data