Additional file 1.
Minor sequence frequencies, heterozygosity and PIC values were indicated for all SNPs in the INRA Sigenae database (worksheet 1) and for the validation panel (worksheet 2). Allele frequencies were calculated by direct count of sequence depth for each allele, expected heterozygosities per locus (He) were estimated by He = 2pq and PIC values were estimated by PIC = H-2p2q2, where p and q are the sequence frequencies of the two alternate alleles.
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Boussaha et al. BMC Genomics 2012 13:238 doi:10.1186/1471-2164-13-238