|Pairwise alignments of Xenopus cDNA clones and Xl-PSID consensus sequences: Similarity groupings by e-value|
|Similarity group||Number of XE/Xl-PSID pairwise alignments||Number of TE/Xl-PSID pairwise alignments|
|High (e = 0-10-100)||45||31|
|Moderate (e = 10-99-10-50)||4||17|
|Weak (e = 10-49-10-15)||9||10|
|Low (e > 10-14)||38||43|
|Affirmative pairwise alignments (H, M, W)||58||
(47 unique Xl-PSIDs)
Xl-PSIDs were aligned to Xenopus laevis (XE) and Xenopus tropicalis (TE) inner ear library clone sequences using the BLASTN algorithm. Pairwise alignments were sorted into similarity groups based on e-value. Xl-PSIDs with multiple pairwise alignments to cDNA library clones were counted once. Four Xl-PSIDs aligned to two TE cDNA clones, and one Xl-PSID aligned to eight TE cDNA clones.
Powers et al.
Powers et al. BMC Genomics 2012 13:225 doi:10.1186/1471-2164-13-225