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Open Access Highly Accessed Research article

Probing the Xenopus laevis inner ear transcriptome for biological function

TuShun R Powers, Selene M Virk, Casilda Trujillo-Provencio and Elba E Serrano*

Author Affiliations

Biology Department, New Mexico State University, Las Cruces, USA

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BMC Genomics 2012, 13:225  doi:10.1186/1471-2164-13-225

Published: 8 June 2012

Additional files

Additional file 1:

X. laevis GeneChip® data used to construct table and figures.

Format: XLSX Size: 777KB Download file

Open Data

Additional file 2:

Inner ear tissue (IET), deafness (DF), ion channel (IC), ion transport (IT) HGNCs and transcription factor (pTF) gene symbols.

Format: XLSX Size: 37KB Download file

Open Data

Additional file 3:

TBLASTN results of IET/Xl-PSID affirmative pairwise alignments.

Format: XLSX Size: 62KB Download file

Open Data

Additional file 4:

TBLASTN results of DF/Xl-PSID affirmative pairwise alignments.

Format: XLSX Size: 24KB Download file

Open Data

Additional file 5:

TBLASTN results of IC/Xl-PSID affirmative pairwise alignments.

Format: XLSX Size: 18KB Download file

Open Data

Additional file 6:

IT/Xl-PSIDs identified through data mining and keyword query.

Format: XLSX Size: 30KB Download file

Open Data

Additional file 7:

pTF/Xl-PSIDs compiled from NetAffx™ analysis center, DAVID analysis and Xenbase.

Format: XLSX Size: 191KB Download file

Open Data

Additional file 8:

DAVID analysis of IET/HGNC symbols and IET/Xl-PSIDs.

Format: XLSX Size: 18KB Download file

Open Data

Additional file 9:

Annotation enhancement reveals complexities in data interpretation.

Format: DOCX Size: 14KB Download file

Open Data

Additional file 10:

Agilent bioanalyzer analysis of RNA isolated from X. laevis inner ear tissue.

Format: PDF Size: 261KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 11:

DAVID analysis of putative transcription factors.

Format: XLSX Size: 20KB Download file

Open Data

Additional file 12:

Primers and RT-PCR products.

Format: XLSX Size: 11KB Download file

Open Data