Table 2 |
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|
Chromosome wide significant boar taint QTLs confirmed by a haplotype analysis mapped to Sscrofa10.2 in different breeds. |
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|
QTDT |
QFAM |
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|
|
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|
SSC# |
Trait |
p-value |
emperical p-value |
Peak (Mb) |
Interval (Mb) |
|
|
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|
Duroc |
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|
3 |
log Skatole |
2.0E-05' |
8.0E-05 |
19.615 |
16.518-20.52 |
|
3 |
log Androstenone |
8.0E-05 |
4.0E-05 |
120.04 |
113.99-122.62 |
|
5 |
log S/I-index |
1.0E-05 |
2.0E-05 |
18.728 |
18.728-18.962 |
|
6 |
log Androstenone |
1.0E-05 |
3.0E-05 |
75.721 |
75.721-76.450 |
|
10a |
log Indole |
4.0E-05 |
NS |
7.961 |
7.793-18.265 |
|
10b |
log Indole |
2.0E-05 |
NS |
62.985 |
52.066-63.550 |
|
12 |
log Androstenone |
1.0E-05 |
2.0E-05 |
41.225 |
41.209-46.114 |
|
14 |
log Androstenone |
6.0E-05 |
6.0E-05 |
19.421 |
19.421-21.826 |
|
Landrace |
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|
1 |
log Androstenone |
3.0E-05 |
NS |
164.281 |
164.281-166.282 |
|
2a |
log Androstenone |
2.0E-05 |
6.0E-05 |
98.469 |
85.522-106.398 |
|
2b |
log Androstenone |
2.0E-05 |
4.0E-05 |
142.568 |
142.568-144.814 |
|
5 |
log S/I-index |
6.0E-06 |
4.0E-05 |
87.29 |
62.442-88.563 |
|
6 |
log Indole |
7.0E-06 |
3.0E-05 |
134.996 |
134.141-140.591 |
|
7 |
log Androstenone |
1.0E-06* |
1.0E-05 |
40.375 |
2.451-40.421 |
|
11 |
log Indole |
4.0E-05 |
4.0E-05 |
87.549 |
single SNP |
|
12 |
log Androstenone |
5.0E-05 |
4.0E-05 |
45.898 |
single SNP |
|
14 |
log S/I-index |
3.0E-05 |
3.0E-05 |
152.887 |
149.608-153.745 |
|
14 |
log Indole |
2.0E-06* |
1.0E-05 |
151.637 |
150.832-153.786 |
|
15 |
log Indole |
4.0E-05 |
4.0E-05 |
17.709 |
2.724-17.767 |
|
Yorkshire |
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|
6a |
log S/I-index |
NS |
1.0E-05 |
76.056 |
75.839-80.408 |
|
6b |
log S/I-index |
NS |
2.0E-05 |
157.089 |
155.897-157.734 |
|
7 |
log S/I-index |
3.0E-05' |
1.0E-05 |
99.096 |
98.947-101.548 |
|
8 |
log S/I-index |
NS |
2.0E-05 |
38.293 |
35.328-40.051 |
|
9 |
log Skatole |
7.0E-06 |
1.0E-05 |
30.292 |
15.055-30.539 |
|
11b |
log Androstenone |
8.0E-06 |
7.0E-05 |
75.129 |
78.672-80.006 |
|
12 |
log Androstenone |
2.0E-05 |
7.0E-05 |
37.443 |
35.941-45.383 |
|
14 |
log Androstenone |
5.0E-06 |
2.0E-05 |
138.164 |
single SNP |
|
14 |
log Indole |
6.0E-07** |
1.0E-05 |
152.48 |
149.326-153.593 |
|
|
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|
**,* = p < 0.01, p < 0.05 genome-wide significant, # = Sus scrofa chromosome ' = QTDT on none log transformed trait, NS = not significant at the 5% Bonferroni level |
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|
Gregersen et al. BMC Genomics 2012 13:22 doi:10.1186/1471-2164-13-22 |
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