Table 6

Pair-wise comparison of Phi correlations of probe ratios greater than 2 within each sample group after CBS smoothing
Sample* Phi correlation value
Replicate 1 Replicate 2 Replicate 3 Replicate 4
Normal Replicate 1 1 1.000
UnAmp/UnAmp Replicate 2 1.000 1
Replicate 3 1.000 1.000 1
Replicate 4 1.000 1.000 1.000 1.000
Normal Replicate 1 1 0.842
Amp-R/UnAmp Replicate 2 0.855 1
Replicate 3 0.840 0.843 1
Replicate 4 0.877 0.840 0.809 1
Normal Replicate 1 1 0.805
Amp-G/UnAmp Replicate 2 0.853 1
Replicate 3 0.839 0.796 1
Replicate 4 0.773 0.814 0.707 1
CF1 Replicate 1 1 0.611
Amp-R/UnAmp Replicate 2 0.597 1
Replicate 3 0.764 0.665 1
Replicate 4 0.457 0.625 0.520 1
CF1 Amp-G/UnAmp Replicate 1 1 0.667
Replicate 2 0.687 1
Replicate 3 0.679 0.777 1
Replicate 4 0.632 0.656 0.589 1
CF2 Replicate 1 1 0.768
Amp-R/UnAmp Replicate 2 0.824 1
Replicate 3 0.697 0.744 1
Replicate 4 0.796 0.793 0.707 1
CF2 Replicate 1 1 0.780
Amp-G/UnAmp Replicate 2 0.865 1
Replicate 3 0.798 0.746 1
Replicate 4 0.762 0.728 0.838 1

* Indicates samples on CGH array.

The median Phi correlation values from top to bottom are shown in bold. UnAmp (unamplified samples); Amp-R (REPLI-g amplified samples); Amp-G (GenomiPhi amplified samples).

Han et al.

Han et al. BMC Genomics 2012 13:217   doi:10.1186/1471-2164-13-217

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