Table 4

Common highly under-amplified regions (>3 fold) in Normal, CF1, and CF2 samples after WGA
Chromosome Cytoband Stat (bp) Stop (bp) No. of Probes No. of Genes*
Chr1 p36.33 - p36.32 787630 3693246 967 88
Chr2 q37.3 241165907 241864699 258 13
Chr4 p16.3 533101 3842102 668 38
Chr5 p15.33 25942 2285711 724 30
Chr7 p22.3 42776 2759847 734 30
Chr8 q24.3 142067269 146261757 1480 110
Chr9 q34.2 - q34.3 136872507 140734384 1500 106
Chr10 p15.3 499391 681067 86 1
Chr11 p15.5 - p15.4 271403 3216315 997 78
Chr12 p13.33-p13.31 163393 7069315 87 6
Chr13 q34 114305327 114924254 174 8
Chr14 q32.31-p32.32 101469473 105943028 741 63
Chr16 p13.3 93428 3286713 1256 169
Chr16 q24.2 - q24.3 87871999 89999459 555 35
Chr17 p13.3 47346 1964509 814 13
Chr17 q25.2-p25.3 74886218 80217558 601 62
Chr18 q23 77064970 77617915 219 6
Chr19 p13.3 259195 2442313 983 103
Chr20 q13.33 60782793 62819250 880 91
ChrX q28 152713107 153194997 218 23
ChrY p11.32 10891 1663423 443 19

Cytobands and chromosomal locations are based on hg 19 (NCBI Genome build 37).

* total number of genes located within the under-amplified regions.

Han et al.

Han et al. BMC Genomics 2012 13:217   doi:10.1186/1471-2164-13-217

Open Data