Table 3

Average CNV at various cut-off ratios
Sample Comparison* Percentage with ratios > 1.5 Percentage with ratios > 2.0 Percentage with ratios > 2.5 Percentage with ratios > 3.0 Percentage with ratios > 4.0
Normal UnAmp/UnAmp 0.004 0.000 0.000 0.000 0.000
Amp-R/UnAmp 2.043 0.525 0.194 0.077 0.010
Amp-G/UnAmp 8.139 1.273 0.339 0.109 0.017
CF1 Amp-R/UnAmp 2.191 0.478 0.162 0.057 0.010
Amp-G/UnAmp 3.682 0.747 0.230 0.074 0.015
CF2 Amp-R/UnAmp 1.913 0.486 0.192 0.075 0.007
Amp-G/UnAmp 2.883 0.605 0.183 0.061 0.015

* Indicates samples on the CGH array. The averages of the 4 replicate WGA are given. UnAmp (unamplified samples); Amp-R (REPLI-g amplified samples); Amp-G (GenomiPhi amplified samples).

Han et al.

Han et al. BMC Genomics 2012 13:217   doi:10.1186/1471-2164-13-217

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