Table 1

Relative synthesis rates of selected proteins
Identifier

MapMan

Bincode

Description

Protein

Ratio

SD

Ratio

count

Abundance

index

SD
Protein with high Ratios 143757 N/A 5.0 +/- 0.5 3 0.3 +/- 0.5
186587 N/A 4.9 +/- 0.5 4 1.5 +/- 0.5
195524 19.1 magnesium chelatase 4.5 +/- 3.8 5 1.0 +/- 0.3
191409 N/A 4.4 +/- 3.1 5 21.8 +/- 28.0
194316 18 co-factor and vitamine metabolism 4.4 +/- 3.2 15 34.2 +/- 17.2
psba psba 4.3 +/- 1.9 12 63.3 +/- 10.2
195711 9.2.2 mitochondrial electron trtansport/ATP synthesis 3.9 +/- 3.3 13 8.2 +/- 5.1
189624 1.1.40 cyclic electron flow- chlororespiration 3.9 +/- 0.1 3 1.2 +/- 0.7
134058 34.16 ABC transporter 3.8 +/- 1.2 16 9.6 +/- 3.6
177538 N/A 3.7 +/- 4.6 12 1.0 +/- 0.6
129468 12.2.2 glutamine synthase 3.6 +/- 3.5 7 20.5 +/- 13.6
RUBISCO rbcL 1.3.1 RuBisCO large subunit, rbcL 0.7 +/- 0.1 32 363.1 +/- 55.1
108283 1.3.2 RuBisCO small subunit, rbcL 0.6 +/- 0.1 15 331.4 +/- 32.3
193086 1.3.13 rbcL N- methyltransferase 1.4 +/- 0.4 4 1.7 +/- 1.1
128745 1.3.13 RubisCO activase 1.2 +/- 0.2 12 41.0 +/- 11.8
Calvin Benson Cycle 135614 1.3.11 Ribulose phosphate-3-epimerase 0.7 +/- 0.2 5 17.7 +/- 6.7
195910 1.3.12 Phosphoribulokinase 1.3 +/- 0.4 6 7.7 +/- 4.0
24084 1.3.7 Fructose-1,6-bisphosphate 1.4 +/- 0.0 2 2.3 +/- 1.6
24459 1.3.6 Fructose-1,6-bisphosphate aldolase 0.8 +/- 0.3 18 51.9 +/- 16.7
141319 1.3.8 Transketolase 0.8 +/- 0.2 23 62.1 +/- 14.8
129019 1.3.4 Glyceraldehyde 3-phosphate dehydrogenase A 0.7 +/- 0.1 20 100.7 +/- 13.7
132210 1.3.3 Phosphoglycerate kinase 0.7 +/- 0.5 16 96.8 +/- 8.2
102889 1.3.4 Glyceraldehyde 3-phosphate dehydrogenase, nonphosphorylating 0.6 +/- 0.1 5 0.8 +/- 0.6
189186 1.3.9 Sedoheptulose-1,7-bisphosphatase 0.6 +/- 0.2 31 111.3 +/- 21.9
26265 1.3.5 Triose phosphate isomerase 0.4 +/- 0.1 7 32.4 +/- 8.2
Photosystem II psbA 1.1.1.2 psbA 4.3 +/- 1.9 12 63.3 +/- 10.2
psbB 1.1.1.2 psbB 0.6 +/- 0.2 25 68.6 +/- 20.3
psbC 1.1.1.2 psbC 0.7 +/- 0.1 29 141.3 +/- 11.1
psbD 1.1.1.2 psbD 1.3 +/- 1.2 15 244.8 +/- 72.3
psbE 1.1.1.2 psbE 0.5 +/- 0.1 3 92.7 +/- 19.7
psbF 1.1.1.2 psbF 0.5 +/- 0.1 4 95.8 +/- 31.2
psbH 1.1.1.2 psbH 0.4 +/- 0.1 4 24.2 +/- 2.9

Protein list with the corresponding H/L ratio at 24 h (0 mM NaCl) and abundance index (AI) across the entire time course. Proteins are sorted in four functional groups: high synthesis rates, RuBisCO, Calvin-Benson cycle and Photosystem II; Joint Genome Institute (JGI) protein identifier, MapMan bincode, a protein description, protein ratio and relative abundance index are reported for each protein.

Mastrobuoni et al.

Mastrobuoni et al. BMC Genomics 2012 13:215   doi:10.1186/1471-2164-13-215

Open Data