|Structured Allen Mouse Brain Atlas riboprobes|
|Intergenic||Intronic||5’ UTR||3’ UTR||Total|
|Expressed structured ncRNAs||141||10||151|
|Expressed structured UTRs||817||4,502||5,126|
|Expressed Atlas probes||462||15||2,492||8,108||16,483|
Structured Allen Mouse Brain Atlas riboprobes have RNA secondary structures predicted by , are expressed above background in the adult mouse brain and are mapped to the mouse genome (mm8). We subdivided structured probes into two genomic locations: (1) structured (long) noncoding RNAs (ncRNAs) have no protein coding potential and the entire probe is intergenic or intronic, and (2) structured UTRs are probes overlapping a UTR exon annotated in UCSC or RefSeq gene tracks with an RNA structure prediction. Total numbers of expressed Allen Mouse Brain Atlas probes (structured and non-structured) are listed. Detailed information about probes and structures are contained in Additional file 1.
Seemann et al.
Seemann et al. BMC Genomics 2012 13:214 doi:10.1186/1471-2164-13-214