Table 1

Structured Allen Mouse Brain Atlas riboprobes
Only Only Overlap Overlap
Intergenic Intronic 5’ UTR 3’ UTR Total
Expressed structured ncRNAs 141 10 151
Expressed structured UTRs 817 4,502 5,126
Expressed Atlas probes 462 15 2,492 8,108 16,483

Structured Allen Mouse Brain Atlas riboprobes have RNA secondary structures predicted by , are expressed above background in the adult mouse brain and are mapped to the mouse genome (mm8). We subdivided structured probes into two genomic locations: (1) structured (long) noncoding RNAs (ncRNAs) have no protein coding potential and the entire probe is intergenic or intronic, and (2) structured UTRs are probes overlapping a UTR exon annotated in UCSC or RefSeq gene tracks with an RNA structure prediction. Total numbers of expressed Allen Mouse Brain Atlas probes (structured and non-structured) are listed. Detailed information about probes and structures are contained in Additional file 1.

Seemann et al.

Seemann et al. BMC Genomics 2012 13:214   doi:10.1186/1471-2164-13-214

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