Table 1

Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum
A. Glycoside Hydrolases families 1 2 3 5 8 9 10 11 13 15 16 18 19 23 26 30 39 43 44 48 51 53 59 74 77 81 94 105 116 124 Total
A. cellulolyticus Genome-wide 2 1 3 16 4 21 4 1 3 1 1 5 2 2 5 3 4 1 2 1 1 1 1 1 3 1 1 1 92
Dockerin-containing proteins 1 12 3 19 4 1 1 4 4 4 1 1 1 1 1 1 1 1 1 62
C. thermocellum Genome-wide 2 1 2 10 1 16 6 1 2 1 2 4 2 3 2 1 6 1 2 1 1 1 1 3 1 73
Dockerin-containing proteins 1 8 1 15 3 1 1 1 3 2 1 5 1 1 1 1 1 1 48
B. Polysaccharide Lyases families 1 9 11
A. cellulolyticus Genome-wide 1 1 3 5
Dockerin-containing proteins 1 1 3 5
C. thermocellum Genome-wide 2 1 1 4
Dockerin-containing proteins 2 1 1 4
C. Carbohydrate Esterases families 1 2 3 4 6 7 8 9 12 14
A. cellulolyticus Genome-wide 2 1 3 4 1 1 1 7 20
Dockerin-containing proteins 2 1 3 1 1 1 4 (6) 13
C. thermocellum Genome-wide 3 1 2 3 1 1 1 2 1 15
Dockerin-containing proteins 3 1 1 (2) 1 1 1 (2) 8

Numbers represent proteins which contain one or more modules of the different protein families (glycoside hydrolases, polysaccharide lyases and carbohydrate esterases) as were identified by CAZy. The number of proteins are compared between cellulosomal and non-cellulosomal (genome-wide) proteins. Data are provided for both species. Numbers of modules which appear more than once in the same protein are shown parenthetically.

Dassa et al.

Dassa et al. BMC Genomics 2012 13:210   doi:10.1186/1471-2164-13-210

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