Table 1

General features of theGeobacter lovleyistrain SZ chromosome
Chromosome
General features
Size (bp) 3,917,761
GC percentage 54.8
Total number of predicted protein-coding genes 3,644
Number of pseudogenes 38
Protein-coding genes
Total intact protein-coding genes 3,606
- matching annotated homologs 3,138
- matching hypotheticals only 296
- with no public database matches 171
- in one or more COGs 2817
- in energy production COGs 279
- in coenzyme metabolism COGs 122
- as predicted c-type cytochromes 49
- percent with top BlastP match in Geobacter spp. 40%
- percent with top BlastP match in Pelobacter spp. 29%
- percent with top BlastP match in other δ-Proteobacteria 5%
Non-protein-coding features
Number of rRNA operons (16S-23S-5S) 2
Number of transfer RNAs 45
CRISPR regions 1

Wagner et al.

Wagner et al. BMC Genomics 2012 13:200   doi:10.1186/1471-2164-13-200

Open Data