Table 1

Quality data about the SNP markers flanking QTL for Salmonella colonization[7]added to the original SNP data set[4]
Marker Chr1 Position (bp) N2 Inf3 SD4 pSD5
IAH-2B 2 19,869,778 182 23/23 NS 0.052
IAH-2 C 22,726,015 182 23/23 S* 0.010
IAH-2D 24,308,758 179 22/23 NS 0.130
IAH-3A 3 92,315,616 152 20/23 S*** 0.000
IAH-3B 95,968,986 182 23/23 S*** 0.001
IAH-3 C 110,245,601 184 23/23 NS 0.378
IAH-12B 12 14,781,290 181 23/23 NS 0.597
IAH-12 C 17,496,361 181 23/23 NS 0.704
IAH-12D 18,927,306 162 1/23 S*** 0.000
IAH-25A 25 875,498 92 17/23 NS 0.093
IAH-25B 1,843,484 184 23/23 NS 0.556

1Chromosome.

2Number of genotypes available in the F2 Nx61 progeny P2.

3Informativity: number of heterozygous F1 parents on the total number of F1 parents.

4Significance level of the segregation distorsion evaluated with a Chi-square test: NS non-significant; * significant with p < 0.05 ; *** significant with p < 0.001.

5Probabilities associated with a Chi-square test between genotypic frequencies expected according to Mendelian rules and observed frequencies.

Thanh-Son et al.

Thanh-Son et al. BMC Genomics 2012 13:198   doi:10.1186/1471-2164-13-198

Open Data