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Open Access Highly Accessed Research article

Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants

Yijun Meng1*, Chaogang Shao2, Huizhong Wang1 and Yongfeng Jin3*

Author Affiliations

1 College of Life and Environmental Sciences, Hangzhou Normal University, Xuelin Street 16#, Xiasha, Hangzhou, 310036, P. R. China

2 College of Life Sciences, Huzhou Teachers College, Huzhou, 313000, P. R. China

3 Institute of Biochemistry, College of Life Sciences, Zhejiang University, Zijingang Campus, Yu Hang Tang Road 866#, Hangzhou, 310058, P. R. China

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BMC Genomics 2012, 13:197  doi:10.1186/1471-2164-13-197

Published: 21 May 2012

Additional files

Additional file 1:

Table S1. Prediction results of the target mimics of the Arabidopsis microRNAs.

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Additional file 2:

Table S2. Prediction results of the target mimics of the rice microRNAs.

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Additional file 3:

Table S3. Annotation information of the target mimics in Arabidopsis.

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Additional file 4:

Figure S1. Degradome sequencing data-based identification of the targets of sequestered microRNAs in Arabidopsis.

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Additional file 5:

Figure S2. Degradome sequencing data-based identification of the targets of sequestered microRNAs in rice.

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Additional file 6:

Figure S3. GO (Gene Ontology) term enrichment analysis of the targets of sequestered microRNAs in Arabidopsis and rice.

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Additional file 7:

Figure S4. Degradome sequencing data-based identification of the microRNAs regulating the target mimics in Arabidopsis.

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Additional file 8:

Figure S5. Degradome sequencing data-based identification of the microRNAs regulating the target mimics in rice.

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Additional file 9:

Figure S6. The whole network constructed in Arabidopsis.

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Additional file 10:

Figure S7. The whole network constructed in rice.

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Additional file 11:

Table S4. Annotation information of the target mimics in rice.

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Additional file 12:

Figure S8. Ath-miR159/319-, ath-miR164-, and ath-miR395-involved subnetworks.

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Additional file 13:

Figure S9. Certain subnetworks in Arabidopsis and rice.

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