Table 3

Distributions of depth for SNPs outside capture regions that had GQ ≥ 20 and depth ≥ 5
Depth SureSelect TrueSeq 1000 G
≤ 200 bp > 200 bp ≤ 200 bp > 200 bp ≤ 200 bp > 200 bp
5 1156 3463 1225 3963 38 194
6 1000 1681 1278 2950 46 142
7 4036 3630 3200 4702 135 290
8 3483 2570 4005 4582 123 246
9 3040 2020 4222 3995 103 199
10 2647 1658 4231 3447 98 174
11 2349 1420 4261 2972 95 160
12 2099 1251 4223 2628 85 142
13 1866 1096 4188 2366 91 122
14 1694 995 4110 2136 84 115
15 1535 891 4072 1906 84 105
16 1376 823 3949 1749 71 101
17 1270 766 3887 1649 67 91
18 1159 721 3743 1490 67 84
19 1072 672 3654 1421 64 83
≥ 20 15074 15539 63620 62350 1762 1884

The numbers are average numbers of SNPs over the samples from the same capture assay.

Guo et al.

Guo et al. BMC Genomics 2012 13:194   doi:10.1186/1471-2164-13-194

Open Data