Table 2

GC content (base pairs in millions)
Inisde TR Outside ≤ 200 bp Outside > 200 bp
Depth ≥ 30 Depth ≥ 20 Depth ≥ 10
SureSelecta total BP 37.8 61.0 2.4 3.4 5.3
(n = 22) GC 19.1 25.6 1.1 1.6 2.5
GC% 50.6% 42.0% 45.6% 45.9% 46.4%
TrueSeqb total BP 62.1 76.9 11.3 13.7 18.5
(n = 6) GC 30.4 32.5 5.1 6.1 8.4
GC% 49.0% 42.30% 44.9% 44.8% 45.4%
1000 Gc total BP 1.4 3.3 0.5 1.3 2.5
(n = 6) GC 0.7 1.4 0.2 0.6 1.1
GC% 51.6% 41.6% 46.2% 45.4% 45.2%

a Based on hg18 and Agilent SureSelect v1.

b Based on hg19 and Illumina TrueSeq.

c Based on hg18 and NimbleGen 1.4 M cap kit.

Guo et al.

Guo et al. BMC Genomics 2012 13:194   doi:10.1186/1471-2164-13-194

Open Data