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Open Access Highly Accessed Open Badges Research article

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

Dejun Li1*, Zhi Deng1, Bi Qin1, Xianghong Liu1 and Zhonghua Men2*

Author Affiliations

1 Key Laboratory of Biology and Genetic Resources of Rubber Tree, Ministry of Agriculture, Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou, Hainan, 571737, China

2 Baotou Teachers College, Science Road, Qingshan district, Baotou, Inner Mongolia, 014030, China

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BMC Genomics 2012, 13:192  doi:10.1186/1471-2164-13-192

Published: 18 May 2012

Additional files

Additional file 1 :

The nucleotide sequences of assembled unigenes without the TSA standards.

Format: TXT Size: 78KB Download file

Open Data

Additional file 2 :

Summary of the unigenes annotated to the reference canonical pathways in the KEGG database. The file contains KEGG pathway and the number of unigenes involved in the KEGG pathway.

Format: XLS Size: 32KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3 :

The characterizations of EST-SSR markers. The file contains unigenes ID, primer sequences, product size, motif and repeat number, SSR length, polymorphism and amplification result.

Format: XLS Size: 51KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data