Table 4

Transcription factor families present in the gilthead sea bream transcriptome
Transcription Factor Family Example of family member Number of isotigs Percentage of total transcription factors
ZnF-C2H2 interleukin enhancer-binding factor 3 54 16.8
Chromatin-associated yy1 transcription represor factor 32 10.0
Cofactor e1a binding protein p300 25 10.9
Beta-scaffold signal transducer and activator of transcription 3 24 7.5
bZIP transcription factor jun-d 25 7.8
bHLH hypoxia-inducible factor 3 alpha 21 6.5
General transcription factor transcription factor 20 20 6.2
Protein-protein interaction zinc finger and btb domain containing 33 16 5.0
Homeobox six homeobox 1 14 4.4
Others bromodomain adjacent to zinc finger 2b 19 5.9
Nuclear hormone receptor Peroxisome proliferator-activated receptor alpha 15 4.7
ZnF-Others glucocorticoid receptor dna-binding factor 1 16 5.0
High mobility group box transcription factor sox-6 isoform 2 8 2.5
Trp-clusters interferon regulatory factor 2 9 2.8
Forkhead forkhead box o3 4 1.2
TEA tea domain family member 3 3 0.9
Dwarfin smad family member 2 3 0.9
E2F e2f transcription factor 6 2 0.6

Genes were categorized according to the description in Uniprot [27] and TFCONES, Institute of Molecular and Cell Biology [28].

Znf-C2H2: Zinc finger domain with two conserved cysteines and two histidines co-ordinate a zinc ion.

bZIP basic leucine zipper.

bHLH basic helix loop helix transcription domain.

Trp-clusters: include Interferon regulatory transcription factors and E-twenty six transcription factors.

TEA transcriptional enhancer factor.

Garcia de la serrana et al.

Garcia de la serrana et al. BMC Genomics 2012 13:181   doi:10.1186/1471-2164-13-181

Open Data