Table 2 |
|||||||
| Transcripts with functional domains deleted that were experimentally confirmed by PCR | |||||||
| Isotig annotation | CDS fraction (%) | Transcripts coverage | Orthologs ID | Number of exons predicted | Exon deleted | IPR domain lost | Function |
| Aspartate beta hydroxylase | 37 | 4 | ENSTNIT000000003370 | 3 | 2 | IPR018939 | Authophagic related protein 27 (ATG27) |
| Coagulation factor x | 75 | 4 | ENSGACT00000011445 | 13 | 9 and 10 | IPR000294 | GLA domain |
| IPR000742 | EGF3 domain | ||||||
| Nucleotide binding | 88 | 4 | ENSGACT00000002245 | 9 | 1 and 2 | IPR000808 | Mrp site |
| IPR019591 | ATPase like ParA | ||||||
| Bridging integrator 1 | 100 | 50 | ENSGACT00000020571 | 18 | 1 to 10 | IPR004148 | PAR domain |
| IPR003005 | Amphyphysin | ||||||
| Paraxonase 2 | 87 | 5 | ENSTNIG00000018456 | 14 | 12 | No-IPR | Signal Peptide |
| IPR013838 | autoregulation binding site | ||||||
| Cathepsin H | 75 | 4 | ENSTNIG00000022446 | 7 | 1 | IPR013201 | Proteinase inhibitor, cathepsin propeptide |
| Polyadenylate-binding protein- interacting protein 2 | 100 | 4 | ENSTNIG00000005741 | 8 | 6 | IPR009818 | Ataxin 2 |
| Transitional endoplasmic reticulum atpase (cdc48) | 100 | 40 | ENSGACG00000018832 | 9 | 8 | IPR003338 | AAA + Atpase domain |
| IPR009010 | Aspartate descarboxylase fold | ||||||
| S-adenosylmethionine decarboxylase | 50 | 5 | ENSTNIG00000002751 | 6 | 5 | IPR018166 | adenosylmethionine descarboxylase |
| O-sialoglycoprotein endopeptidase | 62 | 4 | ENSGACG00000019496 | 6 | 5 | IPR017860 | Peptidase M22, Glycopeptidase |
| Zinc finger x-chromosomal protein | 30 | 4 | ENSGACG00000020679 | 2 | 1 | IPR007087 | Zinc finger C2H2 |
| Dead (asp-glu-ala-asp) box polypeptide 1 | 57 | 6 | ENSGACG00000011162 | 13 | 8 | IPR000504 | RNA recognition motif domain |
Garcia de la serrana et al. BMC Genomics 2012 13:181 doi:10.1186/1471-2164-13-181
