Table 2

Transcripts with functional domains deleted that were experimentally confirmed by PCR
Isotig annotation CDS fraction (%) Transcripts coverage Orthologs ID Number of exons predicted Exon deleted IPR domain lost Function
Aspartate beta hydroxylase 37 4 ENSTNIT000000003370 3 2 IPR018939 Authophagic related protein 27 (ATG27)
Coagulation factor x 75 4 ENSGACT00000011445 13 9 and 10 IPR000294 GLA domain
IPR000742 EGF3 domain
Nucleotide binding 88 4 ENSGACT00000002245 9 1 and 2 IPR000808 Mrp site
IPR019591 ATPase like ParA
Bridging integrator 1 100 50 ENSGACT00000020571 18 1 to 10 IPR004148 PAR domain
IPR003005 Amphyphysin
Paraxonase 2 87 5 ENSTNIG00000018456 14 12 No-IPR Signal Peptide
IPR013838 autoregulation binding site
Cathepsin H 75 4 ENSTNIG00000022446 7 1 IPR013201 Proteinase inhibitor, cathepsin propeptide
Polyadenylate-binding protein- interacting protein 2 100 4 ENSTNIG00000005741 8 6 IPR009818 Ataxin 2
Transitional endoplasmic reticulum atpase (cdc48) 100 40 ENSGACG00000018832 9 8 IPR003338 AAA + Atpase domain
IPR009010 Aspartate descarboxylase fold
S-adenosylmethionine decarboxylase 50 5 ENSTNIG00000002751 6 5 IPR018166 adenosylmethionine descarboxylase
O-sialoglycoprotein endopeptidase 62 4 ENSGACG00000019496 6 5 IPR017860 Peptidase M22, Glycopeptidase
Zinc finger x-chromosomal protein 30 4 ENSGACG00000020679 2 1 IPR007087 Zinc finger C2H2
Dead (asp-glu-ala-asp) box polypeptide 1 57 6 ENSGACG00000011162 13 8 IPR000504 RNA recognition motif domain

Garcia de la serrana et al.

Garcia de la serrana et al. BMC Genomics 2012 13:181   doi:10.1186/1471-2164-13-181

Open Data