Open Access Highly Accessed Research article

Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation

Tim Kahlke1*, Alexander Goesmann2, Erik Hjerde1, Nils Peder Willassen1 and Peik Haugen1

Author Affiliations

1 Department of Chemistry, Faculty of Science and Technology, The Norwegian Structural Biology Centre, University of Tromsø, 9037, Tromsø, Norway

2 Center for Biotechnology (CeBiTec), Institute for Bioinformatics, Bielefeld University, Bielefeld, Germany

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BMC Genomics 2012, 13:179  doi:10.1186/1471-2164-13-179

Published: 10 May 2012

Additional files

Additional file 1:

Genomes used in this study Office word document TableS1.doc. Complete list of all bacterial strains used in the analysis.

Format: DOC Size: 136KB Download file

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Additional file 2:

Unique core genomes of genophyletic groups of isolates. Office word document TableS2.doc. Annotation summary of 46 unique core genomes of genophyletic groups that contain more than 10 genes per isolate. Unique core genomes that contain genes with functions related to pathogenicity are highlighted in grey. (1) Numbers in brackets denote the number of proteins involved in the given function. (2) Estimate of genetic loci the genes are distributed over in the chosen template isolate sequence.

Format: DOC Size: 79KB Download file

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Additional file 3:

Detailed annotation summary of unique core genomes of genophyletic groups. Office word document TableS3.doc. Table of unique core genomes of genophyletic groups of isolates containing the complete names of isolates included. Additionally, more detailed annotation remarks are shown.

Format: DOC Size: 120KB Download file

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