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Open Access Research article

Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension

Agnieszka Doroszuk1*, Martijs J Jonker23, Nicolien Pul1, Timo M Breit23 and Bas J Zwaan14

Author Affiliations

1 Evolutionary Biology, Institute of Biology, Leiden University, Leiden, 2333 BE, The Netherlands

2 MicroArray Department & Integrative Bioinformatics Unit, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, 1098 XH, The Netherlands

3 Netherlands Bioinformatics Centre, Nijmegen, The Netherlands

4 Present address: Laboratory of Genetics, Plant Sciences, Wageningen University, Wageningen, 6708 PB, The Netherlands

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BMC Genomics 2012, 13:167  doi:10.1186/1471-2164-13-167

Published: 4 May 2012

Abstract

Background

While studying long-lived mutants has advanced our understanding of the processes involved in ageing, the mechanisms underlying natural variation in lifespan and ageing rate remain largely unknown. Here, we characterise genome-wide expression patterns of a long-lived, natural variant of Drosophila melanogaster resulting from selection for starvation resistance (SR) and compare it with normal-lived control flies (C). We do this at two time points representing middle age (90% survival) and old age (10% survival) respectively, in three adult diets (malnutrition, optimal food, and overfeeding).

Results

We found profound differences between Drosophila lines in their age-related expression. Most of the age-associated changes in normal-lived flies were abrogated in long-lived Drosophila. The stress-related genes, including those involved in proteolysis and cytochrome P450, were generally higher expressed in SR flies and showed a smaller increase in expression with age compared to C flies. The genes involved in reproduction showed a lower expression in middle-aged SR than in C flies and, unlike C flies, a lack of their downregulation with age. Further, we found that malnutrition strongly affected age-associated transcript patterns overriding the differences between the lines. However, under less stressful dietary conditions, line and diet affected age-dependent expression similarly. Finally, we present lists of candidate markers of ageing and lifespan extension.

Conclusions

Our study unveils transcriptional changes associated with lifespan extension in SR Drosophila. The results suggest that natural genetic variation for SR and lifespan can operate through similar transcriptional mechanisms as those of dietary restriction and life-extending mutations.

Keywords:
Ageing; Gene expression; Microarray; Drosophila melanogaster; Natural variation; Diet