Table 3

PAC strains included to study the suitability of mtDNA markers for species diagnosis
Taxon Strain1 Culture collection number2 Host Geographic origin GenBank accession numbers
cox13 rnl Rps3 - N-acetyl- transferase atp9 - nad4
Phialocephala turicensis 1_124_1 CBS 119234 Picea abies Zürichberg; Switzerland n.a. [GenBank:JN091454] [GenBank:JN091495] [GenBank:JN091530]
1_124_2 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091455] [GenBank:JN091496] [GenBank:JN091531]
1_176_1* CBS 119264 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091456] [GenBank:JN091497] [GenBank:JN091532]
1_197_4 CBS 119265 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091457] [GenBank:JN091498] [GenBank:JN091533]
Phialocephala letzii 2_120_3 CBS 119266 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091458] [GenBank:JN091499] [GenBank:JN091534]
2_126_3 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091459] [GenBank:JN091500] [GenBank:JN091535]
2_146_1* CBS 119268 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091460] [GenBank:JN091501] [GenBank:JN091536]
2_152_2 CBS 119267 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091461] [GenBank:JN091502] [GenBank:JN091537]
Phialocephala europaea 3_117_2 CBS 119269 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091462] [GenBank:JN091503] [GenBank:JN091538]
3_122_3 CBS 119270 P. abies Zürichberg; Switzerland [GenBank:JN091450] [GenBank:JN091463] [GenBank:JN091504] [GenBank:JN091529]
3_136_1 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091464] [GenBank:JN091505] [GenBank:JN091539]
3_171_5* CBS 119271 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091465] [GenBank:JN091506] [GenBank:JN091540]
Phialocephala helvetica 4_123_4 CBS 119272 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091466] [GenBank:JN091507] [GenBank:JN091541]
4_136_4 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091467] [GenBank:JN091508] [GenBank:JN091542]
4_138_5* CBS 119273 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091468] [GenBank:JN091509] [GenBank:JN091543]
4_145_2 CBS 119274 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091469] [GenBank:JN091510] [GenBank:JN091544]
4_153_2 P. abies Zürichberg; Switzerland [GenBank:JN091451] [GenBank:JN091470] [GenBank:JN091511] [GenBank:JN091545]
Phialocephala uotiloensis 5_134_3 P. abies Zürichberg; Switzerland n.a. [GenBank:JN091471] [GenBank:JN091512] [GenBank:JN091546]
5_220_1 CBS 119276 P. abies Uetliberg; Switzerland n.a. [GenBank:JN091472] [GenBank:JN091513] [GenBank:JN091547]
5_234_5 CBS 119277 P. abies Uetliberg; Switzerland n.a. [GenBank:JN091473] [GenBank:JN091514] [GenBank:JN091548]
5_264_1r* CBS 119275 P. abies Uetliberg; Switzerland n.a. [GenBank:JN091474] [GenBank:JN091515] [GenBank:JN091549]
Phialocephala subalpina 6_30_4 CBS 119279 P. abies Bödmeren; Switzerland n.a. [GenBank:JN091475] [GenBank:JN091516] [GenBank:JN091550]
6_35_6v CBS 119278 Vaccinium myrtillus Bödmeren; Switzerland n.a. [GenBank:JN091476] [GenBank:JN091517] [GenBank:JN091551]
6_70_1 UAMH 11012 P. abies Bödmeren; Switzerland [GenBank:JN031566] [GenBank:JN031566] [GenBank:JN031566] [GenBank:JN031566]
6_78_2* CBS 119280 P. abies Bödmeren; Switzerland n.a. [GenBank:JN091477] [GenBank:JN091518] [GenBank:JN091553]
Phialocephala fortinii s.s. 7_6_7v V. myrtillus Bödmeren; Switzerland [GenBank:JN091452] [GenBank:JN091480] [GenBank:JN091519] [GenBank:JN091554]
7_45_5 CBS 119281 P. abies Bödmeren; Switzerland n.a. [GenBank:JN091478] [GenBank:JN091520] [GenBank:JN091555]
7_62_7v CBS 119282 V.myrtillus Bödmeren; Switzerland n.a. [GenBank:JN091479] [GenBank:JN091521] [GenBank:JN091556]
7_K92_049 CBS 114608 P. abies Odenwald; Germany n.a. [GenBank:JN091481] [GenBank:JN091522] [GenBank:JN091557]
7_K93_444* CBS 443.86 P. sylvestris Suonenjoki; Finland n.a. [GenBank:JN091482] [GenBank:JN091523] [GenBank:JN091558]
Acephala applanata T1_50_2 P. abies Bödmeren; Switzerland n.a. [GenBank:JN091483] [GenBank:JN091524] [GenBank:JN091559]
T1_51_3 P. abies Bödmeren; Switzerland n.a. [GenBank:JN091484] [GenBank:JN091525] [GenBank:JN091560]
T1_K92_113* CBS 109321 P. abies Bödmeren; Switzerland n.a. [GenBank:JN091485] [GenBank:JN091526] [GenBank:JN091561]
T1_K92_131 CBS 109322 P. abies Bödmeren; Switzerland [GenBank:JN091453] [GenBank:JN091486] [GenBank:JN091527] [GenBank:JN091562]

Strains of cryptic species of Phialocephala fortinii s.l. and Acephala applanata included to study the suitability of mtDNA markers for species diagnosis

1type strains are marked by an asterisk

2CBS, Centralbureau voor Schimmelcultures, Utrecht, The Netherlands; UAMH, University of Alberta, Microfungus Collection and Herbarium, Alberta, Canada

3sequences are only available for strains included in the screening to detect mtDNA polymorphisms

Duò et al.

Duò et al. BMC Genomics 2012 13:166   doi:10.1186/1471-2164-13-166

Open Data