Additional file 5 .

Figure S5. Heatmap comparing patterns inferred in CoGAPS as plotted Figure S2 (filled boxes on rows) to patterns that would be inferred from projecting expression patterns as described in the methods (open boxes on rows) colored according to the row figure legend. As indicated in the row figure legend, patterns are plotted for each of three CoGAPS simulations, colored in red (simulation 1), green (simulation 2), and blue (simulation 3) along the rows. The bars across the columns indicate media and forced expression conditions, colored according to the figure legend. Shading of these bars indicates media (white for serum starved, grey for serum, green for EGF, and blue for TNF╬▒) while borders indicate forced expression (grey for HaCaTWT, black for HaCaT-vector, green for HaCaT-EGFRWT, blue for HaCaT-p65WT, and red for HaCaT-HRASVal12D).

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Fertig et al. BMC Genomics 2012 13:160   doi:10.1186/1471-2164-13-160