Table 1

Capture efficiency

Low calving interval pool

High calving interval pool


Total sequencing data generated (Gb)

1.57

1.38

Sequence data mapped to bovine genome (Gb)

1.23 (78%)

0.9 (67%)

Data mapped to targeted regions (Mb)

143 (12%)

132 (14%)

Data remaining after quality control (Mb)

74 (52%)

48 (34%)

Number of bases targeted (Mb)

1.54

1.54

Quantity of bases covered (Mb)

1.18 (76%)

1.20 (77%)

Average fold coverage per base

56

32


Percentages in parentheses represent proportions related to the category above each field.

Mullen et al. BMC Genomics 2012 13:16   doi:10.1186/1471-2164-13-16

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