Additional file 10.
Table S2. Features found at predicted enhancer and promoter-like candidates. The numbers of predicted Enh and PrL regions that overlapped with the indicated features are shown. Both the full set of predictions and the probability >0.8 set are shown as well as the overlaps with the unknown regions. P300, H3K4me1 and H3K27ac data are from Creyghton et al. 2010, CHD7 data is from Schnetz et al. 2010. * Data not shown as peaks overlapping TSS were removed from Creyghton et al. 2010 data and PrL frequently overlap TSS. Transcription factor peaks includes: KLF4, STAT3, SMAD1, E2F1, TFCP2L1, ZFX, and ESRRB ChIP-Seq data from mouse ES cells. LincRNA (large intergenic non-coding RNA).
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Chen et al. BMC Genomics 2012 13:152 doi:10.1186/1471-2164-13-152