Open Access Highly Accessed Research article

The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction

Gina A Garzón-Martínez1, Z Iris Zhu2, David Landsman2, Luz S Barrero13 and Leonardo Mariño-Ramírez123*

Author Affiliations

1 Plant Molecular Genetics Laboratory, Center of Biotechnology and Bioindustry (CBB), Colombian Corporation for Agricultural Research (CORPOICA), Bogota, Colombia

2 Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, United States of America, Bethesda, MD, USA

3 PanAmerican Bioinformatics Institute, Santa Marta, Magdalena, Colombia

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BMC Genomics 2012, 13:151  doi:10.1186/1471-2164-13-151

Published: 25 April 2012

Additional files

Additional file 1::

Cape gooseberry cDNAs. The annotated FASTA sequences of the assembled transcriptome, including singletons.

Format: ZIP Size: 8.4MB Download file

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Additional file 2::

Functional annotation of ten Physalis peruviana SSRs markers related to plant defense.

Format: DOC Size: 165KB Download file

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Additional file 3::

Cape gooseberry gene model predictions using the tomato genome. Gene model predictions using Splign from cDNA to genome alignments to the tomato genome.

Format: ZIP Size: 1.4MB Download file

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Additional file 4::

Cape gooseberry gene model predictions using the potato genome. Gene model predictions using Splign from cDNA to genome alignments to the potato genome.

Format: ZIP Size: 1.6MB Download file

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Additional file 5::

Phylogenetic analysis workflow.

Format: TIFF Size: 309KB Download file

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