Additional file 6.
Figure S6. Sequence alignment of two independent regions of Miscanthus PPDK paralogs 1 and 2 illustrating indels and SNV used as molecular markers to place C4-PPDK on the linkage map. A) 129 base pairs of sequence from PPDK paralog 1. The G/A single nucleotide polymorphism was converted into the CAPS marker, EBI 847. B) 129 base pairs of PPDK paralog 2 containing indels that were converted into a sequence length polymorphism marker, EBI 848. The oligonucleotide primers, UD3F and UD3R, used to amplify this region are shown.
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Swaminathan et al. BMC Genomics 2012 13:142 doi:10.1186/1471-2164-13-142