Table 3

Characteristics of the Streptomyces genomes used in this study

Strain

Contigs/

Scaffolds

Genome Size (bp)

N50 (bp)

Complete/Partial ORFs (% Partial)a

Ref.; NCBI project accession number


S. albus J1074

501/2

6,619,469

23,675

5442/575 (9.6)

The Broad Institute, unpublished; PRJNA37045

S. avermitilis MA-4680

Complete

9,119,895

-

7676/0 (0)

[25,26]; PRJNA47909

S. bingchenggensis BCW-1

Complete

11,936,683

-

10035/0 (0)

[27]; PRJNA35119

S. clavuligerus ATCC27064 (#1)

279/2

8,528,397

50,310

6893/186 (2.6)

[28]; PRJNA42475

S. clavuligerus ATCC27064 (#2)

597/158

6,729,086

16,887

5692/430 (7.0)

The Broad Institute, unpublished; PRJNA28551

S. clavuligerus ATCC27064 (#3)

89/5

9,134,976

203,387

7567/58 (0.8)

[21]; PRJNA19249

S. coelicolor A3(2)

Complete

9,054,847

-

8153/0 (0)

[29]; PRJNA35153

S. flavogriseus ATCC33331

Complete

7,656,104

-

6763/0 (0)

The Joint Genome Institute, unpublished; PRJNA37207

S. ghanaensis ATCC14672

616/3

8,223,278

24,170

7166/649 (8.3)

The Broad Institute, unpublished; PRJNA37041

S. griseoflavus Tu4000

927/1

7,364,052

14,024

6076/1187 (16.3)

The Broad Institute, unpublished; PRJNA37185

S. griseus subsp. griseus NBRC13350

Complete

8,545,929

-

7136/0 (0)

[30]; PRJNA36231

S. griseus XylebKG-1

4/2

8,731,583

603,0272

7374/5 (0.1)

[31]; PRJNA38545

S. hygroscopicus ATCC53653

783/2

10,466,286

27,794

8647/1092 (11.2)

The Broad Institute, unpublished; PRJNA37181

S. lividans TK24

333/1

8,190,887

49,556

7183/419 (5.5)

The Broad Institute, unpublished; PRJNA37179

S. pristinaespiralis ATCC25486

844/1

7,633,609

17,558

6283/1000 (13.7)

The Broad Institute, unpublished; PRJNA36845

S. roseosporus NRRL11379

280/2

7,763,119

57,471

6737/394 (5.5)

The Broad Institute, unpublished; PRJNA65085

S. roseosporus NRRL15998

371/1

7,560,086

38,584

6493/462 (6.6)

The Broad Institute, unpublished; PRJNA55545

S. scabiei 87-22

Complete

10,148,695

-

8746/0 (0)

Wellcome Trust Sanger Institute, unpublished; PRJNA35395

Streptomyces sp. C

652/4

7,916,041

25,608

6906/815 (10.6)

The Broad Institute, unpublished; PRJNA37177

Streptomyces sp. e14

716/13

7,146,196

21,378

5780/893 (13.4)

The Broad Institute, unpublished; PRJNA38087

Streptomyces sp. Mg1

466/127

7,105,723

25,079

6344/384 (5.7)

The Broad Institute, unpublished; PRJNA36841

Streptomyces sp. PP-C42

7074/-

6,467,850

1,414

2503/8392 (77.0)

[16]; PRJNA63125

Streptomyces sp. SPB74

845/2

6,505,970

13,132

5401/917 (14.5)

The Broad Institute, unpublished; PRJNA36843

Streptomyces sp. SPB78

694/4

6,897,976

20,678

5723/853 (13.0)

The Broad Institute, unpublished; PRJNA37173

S. sviceus ATCC29083

552/1

9,055,790

33,523

7921/711 (8.2)

The Broad Institute, unpublished; PRJNA36847

S. viridochromogenes DSM40736

226/1

10,988,130

109,490

7473/328 (4.2)

The Broad Institute, unpublished; PRJNA37183


a Predicted proteins for complete genomes were downloaded directly from the NCBI database; all others were predicted using Prodigal.

Klassen and Currie BMC Genomics 2012 13:14   doi:10.1186/1471-2164-13-14

Open Data