Table 1

Overview of microarray experiment

comparison between genotypes

diff. reg. probes

% all probes

down reg.

% all diff. reg.

upreg.

% all diff. reg.


ManfmzΔ96vs wt stage 17 embryos

3183

7.3

1501

47.2

1682

52.8


ManfmzΔ96/+ vs wt stage 17 embryos

180

0.4

53

29.4

126

70.0


ManfmzΔ96vs ManfmzΔ96/+ stage 17 embryos

2681

6.2

1290

48.1

1391

51.9


ManfΔ96vs wt 29-50 hr AEL larvae

1734

4.0

894

51.6

840

48.4


69B-GAL4>UAS-Manf133 vs wt 29-50 hr AEL larvae

1240

2.8

513

41.4

727

58.6


ManfΔ96vs 69B-GAL4 > UAS-Manf133 29-50 hr AEL

2775

6.4

1615

58.2

1160

41.8


The number of differentially regulated probes was compared. In the Agilent Drosophila microarray design (4 × 44 K) there was unequal number of probes targeting the particular gene, ranging from one probe to several per gene.

Palgi et al. BMC Genomics 2012 13:134   doi:10.1186/1471-2164-13-134

Open Data