De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode
1 Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, Sichuan, China
2 Graduate University of the Chinese Academy of Sciences, Beijing, China
BMC Genomics 2012, 13:133 doi:10.1186/1471-2164-13-133Published: 11 April 2012
Additional file 1:
Roots invaded by CCN. A prep-experiment confirmed the CCN J2 could parasitize plant root effectively before RNA extraction. Few hours later after the CCN inoculation, one nematode was detected being piercing root epidermis (Figure S1a). Utilizing the microscope, one CCN J2 was found invading into a root tip of plant, already (Figure S1b; part of the CCN cover was removed).
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Additional file 2:
Resistance related unigenes from GO classification CCN.
Format: XLSX Size: 97KB Download file
Additional file 3:
KEGG pathway mapping.
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Additional file 4:
Defending unigenes from COG alignment.
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Additional file 5:
Unigene annotations in public databases.
Format: RAR Size: 37KB Download file
Additional file 6:
Nematode-like unigenes list in the transcriptome database.
Format: RAR Size: 28KB Download file
Additional file 7:
Resistance candidate unigenes in this study.
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Additional file 8:
Unigenes involved in plant-pathogen interaction pathway.
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Additional file 9:
Unigenes involved in phosphatidy linositol signaling system pathway.
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