Table 2

Conserved miRNA targets and their putative functions

miRNA

Target function

Targeta

*Conserved with

GO annotation


ath

osa

ptc

pta

tch

pab


pde-miR162

DCL1

Singletons83286 (2)

+

+

-

-

-

-

RNA processing

Nodal modulator 1-like

Singletons11093 (1) b

+

+

+

-

-

-

Carboxypeptidase activity

pde-miR166

Class III HD-Zip protein HDZ33

Singletons59617 (2)

+

+

-

-

-

+

DNA binding

pde-miR171

GRAS family transcription factor

Singletons10015 (0.5)b

Singletons84522 (0.5)

+

+

-

-

-

-

DNA binding

Actin binding protein

Singletons83401 (3) b

-

-

-

-

-

-

Actin binding

pde-miR482

Histone deacetylase

Singletons7264 (3) b

+

+

+

-

-

+

Histone deacetylation

pde-miR2118

CC-NBS-LRR resistance-like protein

Singletons50083 (3)

Singletons65538 (3)

Singletons72472 (3)

-

+

-

-

-

+

Defense response


a All predicted miRNA targets with penalty scores (shown in parentheses) of three or less are listed.

b validated by RLM-5' RACE.

*Ath, osa, ptc, pta, tch and pab are the abbreviations for A. thaliana, O. sativa, P. trichocarpa, P. taeda, T. chinensis and P. abies, respectively.

Wan et al. BMC Genomics 2012 13:132   doi:10.1186/1471-2164-13-132

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