Table 1

Summary of sequence read alignments to the reference genome

Sample

In vitro embryos

In vivo embryos


Pair end reads

26,906,451 x 2

38,184,547 x2


Total sequenced fragments

26,906,451

38,184,547


Total mapped fragments

22,428,488

32,384,577


Uniquely mapped fragments

20,389,330

29,728,363


Fragments mapped to autosomes and X chromosome

19,556,926

28,362,794


Fragments mapped to annotated genes

13,304,981

16,976,922


Fragments mapped to annotated exons

6,942,761

8,185,094


Fragments overlapped with annotated introns

6,362,220

8,791,828


Driver et al. BMC Genomics 2012 13:118   doi:10.1186/1471-2164-13-118

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