Table 4

Occurrence of C. metallidurans CH34 metal resistance gene clusters in C. metallidurans strains as indicated by CGHa, b

Gene cluster in CH34c, d

AS39

AS167

AS168

KT01

KT02

KT21

SV661

CH42

CH79

31A

NE12

NA1

NA2

NA4

43015

45957


cdfX, pbr

    R
2cadA pbrC2,

XAC2

XAC2

XAC2

XAC2

XAC2

XAC2

XAC2

XAC2

pbr

    R
3

pbrUb|UaT

    R
pbrABCD

R

UbUa

UbRAD

UbRABCD

mer

    R
TPA'A″

R

R

R

R

R

RPA

RPA

R

R

RA

mer

    R
TPADE urf-2

mer

    R
TPADE urf-2

mer

    R
TΔP

RTΔP

RTΔP

RTΔP

RTΔP

RTΔP

RTΔP

RTΔP

RTΔP

RTΔP

ChrBAF

F

F

BF

BF

BF

BF

chrIBACE

    F
ONPYZ

IBACEOY

IBACEFOY

Z

BO

O

cusDCBAF

D

D

D

DB

D

D

D

D

silDCBA cusΔF

C

F

F

cop

    SR
ABCD

S

S

SC

SC

C

C

SC

SC

C

SC

C

C

C

SC

C

copV-W(*)

IJF

KCIJFOH

FH

czcL

    RS
ubiG czcBa|BbCI

I

I

I

I

I

zntA

czcMNICBAD

    RS
EJ ompP

B

BS

ompP

S

S ompP

S

czcP

ompP

nimBAa|AbC

C

C

BC

BC

C

C

C

BC

BC

C

C

cnr

    YXH
CBAT

HC

HC

YHC

HC

HC

C

HC

YXHCBA

YXHCBAT

C

HC

HC

YXHCA

C

C

nccCB″B'A nreB

CB'

CB

B'

CB"B'A

B"

B"

CB'

CB"B'A

arsPHC1BC2IRM

cupRAC

R

R

agrCBA

    RS

S

S

B

hmz

    RS
hmzBΔA

RB

RB

RBA

RBA

R

R

B

RSBΔA

RSBΔA

RSBΔA

R

R

B

RSBΔA

R

R

hmvCBΔA

CB

C

BA

BA

BA

BA

A

zniABC

    SR
zneP
    RS
CAB
(#)

Ci

Ci

Ci

Ci

Ci

Ci

Ci

Ci

Ci

Ci

Ci

CiCe

CiCe

Ci

hmyCB|hmyA

C

C

A

A


aOnly genes that did not display positive hybridization signals are shown. bSee ref. [8] for the extensive and descriptive table with metal detoxifications in C. metallidurans CH34. cUnderlined genes are regulators; dInsertion (IS or Tn), frameshift and truncation are indicated by (|), (','') and (Δ), respectively. *Complete cluster is copVTKMN

    SR
ABCDIJGFOLQHEW; #zniC (Ci) and zneC (Ce).

Van Houdt et al. BMC Genomics 2012 13:111   doi:10.1186/1471-2164-13-111

Open Data