Table 3

Newly identified putative genomic islands on chromosome 1 and chromosome 2 of C. metallidurans CH34

GI

Replicon

Size (kb)

Coordinates

Features


CMGI-12

CHR1

9.1

2,895,950-2,905,048

Direct repeats (3' end sequence of a

boundary tRNA gene), genes coding for

hypothetical proteins

CMGI-13

CHR1

15.9

2,957,898-2,973,796

Genes involved in polysaccharide

biosynthesis

CMGI-A

CHR2

87.1

813,173-900,292

ISRme1 at one extremity

CMGI-B

CHR2

19.5

1,075,185-1,094,655

Multiple genes coding for phage-related

proteins (associated to phages of Ralstonia

solanacearum)

CMGI-C

CHR2

7.1

1,160,750-1,167,881

Fragment of tyrosine-based site-specific

recombinase at one extremity, direct repeats

(41 bp), gene coding for mannose-binding

lectin

CMGI-D

CHR2

141.2

1,217,667-1,358,908

At one extremity 22 genes in synteny with R.

solanacearum

CMGI-E

CHR2

120.2

2,202,142-2,322,293

Tn7-related genes at one extremity, genes

putatively involved in degradation of

aromatic compounds


Van Houdt et al. BMC Genomics 2012 13:111   doi:10.1186/1471-2164-13-111

Open Data