Table 2

Relative occurrence of C. metallidurans CH34 genomic islands and plasmids in C. metallidurans strains as indicated by CGH*

CMGI

AS39

AS167

AS168

KT01

KT02

KT21

SV661

CH42

CH79

31A

NE12

NA1

NA2

NA4

43015

45957


CMGI-1

90.8

87.5

81.7

81.7

90.8

91.7

86.7

29.2

62.5

23.3

92.5

63.3

65.8

37.5

50.0

41.7

CMGI-2

86.6

86.6

78.6

83.0

86.6

89.3

83.0

27.7

22.3

15.2

30.4

18.8

24.1

12.5

32.1

25.0

CMGI-3

89.5

77.9

47.7

84.9

91.9

87.2

51.2

26.7

22.1

20.9

30.2

26.7

29.1

20.9

30.2

24.4

CMGI-4

88.7

86.8

81.1

84.9

90.6

92.5

86.8

22.6

47.2

13.2

77.4

66.0

64.2

7.5

88.7

86.8

CMGI-5

100

100

100

100

100

100

100

38.9

22.2

16.7

16.7

22.2

27.8

22.2

50.4

44.4

CMGI-6

46.2

46.2

46.2

38.5

46.2

84.6

46.2

23.1

30.8

15.4

7.7

0

7.7

7.7

0

0

CMGI-7

100

100

100

100

100

100

100

100

69.2

100

61.5

53.8

61.5

100

69.2

53.8

CMGI-8

100

100

100

100

100

100

100

42.9

28.6

28.6

28.6

28.6

28.6

28.6

28.6

28.6

CMGI-9

100

100

100

100

100

100

100

20.0

20.0

13.3

6.7

0

13.3

0

0

0

CMGI-10

100

100

100

100

100

100

100

7.1

7.1

0

0

0

7.1

7.1

7.1

0

CMGI-11

100

100

100

100

100

100

100

14.3

57.1

100

57.1

57.1

57.1

28.6

28.6

28.6

CMGI-12§

100

100

100

100

100

100

100

0

0

0

0

0

11.1

0

22.2

0

CMGI-13§

100

100

100

100

100

100

100

100

31.3

25.0

6.3

6.3

12.5

12.5

18.8

18.8

CMGI-A§

89.0

91.8

82.2

87.7

94.5

97.3

91.8

57.5

24.7

84.9

19.2

19.2

21.9

83.6

63.0

61.6

CMGI-B§

100

95.2

85.7

100

100

100

95.2

28.6

19.0

85.7

61.9

14.3

23.8

85.7

71.4

61.9

CMGI-C§

100

100

100

100

100

100

100

14.3

14.3

14.3

14.3

14.3

14.3

0

14.3

14.3

CMGI-D§

96.2

95.2

86.5

87.5

91.3

95.2

91.3

52.9

31.7

91.3

63.5

26.9

32.7

95.2

82.7

77.9

CMGI-E§

99.0

98.0

98.0

96.0

99.0

97.0

99.0

25.7

17.8

9.9

17.8

10.9

20.8

10.9

10.9

8.9

CMGI-28a

91.1

88.9

86.7

86.7

91.1

95.6

88.9

53.3

44.4

73.3

71.1

86.7

66.7

86.7

93.3

95.6

CMGI-28b

100

100

83.3

91.7

100

100

91.7

33.3

100

8.3

100

100

91.7

8.3

25.0

16.7

CMGI-28c

100

83.3

75.0

83.3

83.3

91.7

83.3

25.0

16.7

33.3

8.3

75.0

50.0

75.0

91.7

91.7

pMOL28

93.4

87.5

77.6

86.2

94.1

95.4

82.2

29.6

31.6

72.4

38.8

81.6

55.9

71.7

90.1

88.2

CMGI-30a

98.4

96.8

91.9

88.7

98.4

98.4

93.5

93.5

83.9

83.9

88.7

85.5

85.5

87.1

77.4

72.6

CMGI-30b

98.8

97.6

90.4

73.5

98.8

98.8

92.8

61.4

100

71.1

95.2

95.2

95.2

96.4

66.3

59.0

pMOL30

98.6

97.2

92.6

83.3

99.1

99.1

94.4

55.6

88.0

55.6

88.4

80.1

80.1

86.6

51.4

42.6


*Percentage of genes related to a particular genomic island (CMGI) or plasmid (pMOL) displaying a positive hybridization signal by CGH. §Genomic islands identified in this study.

Van Houdt et al. BMC Genomics 2012 13:111   doi:10.1186/1471-2164-13-111

Open Data